Python module index

• foa3d.frangi
  • analyze_hessian_eigen()
  • compute_dominant_eigen()
  • compute_frangi_features()
  • compute_scaled_hessian()
  • compute_scaled_orientation()
  • compute_scaled_vesselness()
  • frangi_filter()
  • init_frangi_arrays()
  • mask_background()
  • reject_vesselness_background()
  • sort_eigen()
  • write_frangi_arrays()
• foa3d.input
  • CustomFormatter
  • get_cli_parser()
  • get_frangi_config()
  • get_image_info()
  • get_image_size()
  • get_resolution()
  • get_resource_config()
  • load_data()
  • load_microscopy_image()
• foa3d.odf
  • compute_odf_map()
  • compute_orientation_dispersion()
  • compute_vec_tensor_eigen()
  • generate_odf_background()
  • init_odf_arrays()
  • mask_orientation_dispersion()
• foa3d.output
  • create_save_dirs()
  • save_array()
  • save_frangi_arrays()
  • save_odf_arrays()
• foa3d.pipeline
  • analyze_fibers()
  • frangi_analysis()
  • odf_analysis()
  • parallel_frangi_over_slices()
  • parallel_odf_over_scales()
  • reject_brain_cells()
• foa3d.preprocessing
  • config_anisotropy_correction()
  • correct_anisotropy()
• foa3d.printing
  • color_text()
  • print_blur()
  • print_flsh()
  • print_frangi_config()
  • print_frangi_progress()
  • print_image_info()
  • print_import_time()
  • print_odf_info()
  • print_pipeline_heading()
  • print_prepro_heading()
  • print_slicing_info()
• foa3d.slicing
  • adjust_axis_range()
  • check_background()
  • compute_axis_range()
  • compute_overlap()
  • compute_slice_range()
  • compute_slice_shape()
  • crop()
  • crop_img_dict()
  • generate_slice_ranges()
  • get_slicing_config()
  • slice_image()
• foa3d.spharm
  • compute_fiber_angles()
  • compute_real_sph_harm()
  • factorial()
  • fiber_angles_to_sph_harm()
  • fiber_vectors_to_sph_harm()
  • get_sph_harm_ncoeff()
  • get_sph_harm_norm_factors()
  • norm_factor()
• foa3d.utils
  • ceil_to_multiple()
  • create_background_mask()
  • create_memory_map()
  • delete_tmp_data()
  • detect_ch_axis()
  • divide_nonzero()
  • elapsed_time()
  • fwhm_to_sigma()
  • get_available_cores()
  • get_config_label()
  • get_item_bytes()
  • get_item_size()
  • hsv_orient_cmap()
  • normalize_angle()
  • normalize_image()
  • rgb_orient_cmap()
  • transform_axes()